Tutorials

The tutorial notebooks from the Sphinx documentation are preserved as notebooks and rendered without execution during documentation builds.

Notebook sequence

1. Basic operations: model loading, wrapping, inspection, and basic operations.
2. Data fetching and processing: gene-data fetching, preprocessing, and mapping.
3. Model testing: model consistency and metabolic task testing.
4. Model extraction methods: context-specific model generation from gene-expression data.
5. Flux simulation and visualization: flux analysis and plotting.

Notebook execution is disabled for docs builds so that CI remains stable across solver and remote-data environments.